species:   Cocin
pid:       PID1282
parent:    cci-milR-27
paralog:   
locus:     scaffold_38:57309-57363
matures:   ['GGUUGCGAGGCUCGCCAACC', 'UUGGGGAGUCUCGUACCUG']
srr:       SRR9972088
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972088.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972088.cram scaffold_38:57309-57363

1 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

   *************                       ************    
UGGUUGCGAGGCUCGCCAACCAUUGGGCGCGAAUGUUUGGGGAGUCUCGUACCUG
.(((.(((((((((.((((.((((.(...).)))).)))).))))))))))))..
-GGUUGCGAGGCUCGCCAACC---------------------------------- l=20 a=0 c
------------------------------------UUGGGGAGUCUCGUACCUG l=19 a=0 c*
-----------------------------------------GAGUCUCGUA---- l=10 a=1 ma
-----GCGAGGCUCGC--------------------------------------- l=11 a=0 ma*

-----------------------------------------GAGUCUCGUA---- l=10 a=1 (ma)

mb-01011
ax-1011101
ku-01
ss-100011111110
fn-011
